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BIO·ATLASby Bayes Pharma.ai
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AccountStart evaluation
SCIENTIFIC CONNECTOR & MCP ECOSYSTEM · v15

Integrate rather than imitate.

BioAtlas now has live public adapters for PubChem, ChEMBL, RCSB PDB, Open Targets and ClinicalTrials.gov. Enterprise systems remain explicit credential-gated capability contracts and can be reached through the federated sidecar inside a customer data boundary.

Verification OSEvidence Protocol 2.0Developer APIs
LIVE PUBLIC SCIENTIFIC CONNECTORS

Retrieve publicly; govern evidence inside a project.

PubChem, ChEMBL, RCSB PDB, Open Targets and ClinicalTrials.gov remain live retrieval adapters. Signed-in project users can freeze an exact source record/hash as an unreviewed EvidenceObject before connecting it to a claim.

5 live adapters

Live public connectors are ready.

PROVENANCE

Live retrieval envelope

Run a query to inspect provenance.

Capability passports

Every integration carries a scientific contract.

14 connector contracts
model+data · direct-or-managed

AlphaFold / AlphaFold DB

Structure prediction and reference structures

Modalities: Protein · Structure

typed-input-schema · typed-output-schema · version · license · validation-status · compute-profile · context-of-use
model · direct-or-managed

Boltz

Complex structure, affinity and generative-design workflows

Modalities: Protein · Ligand · RNA · DNA

typed-input-schema · typed-output-schema · version · license · validation-status · compute-profile · context-of-use
compute · direct-or-managed

Schrödinger

Docking, FEP, molecular dynamics and physics-based modelling

Modalities: Molecule · Protein

typed-input-schema · typed-output-schema · version · license · validation-status · compute-profile · context-of-use
compute · direct-or-managed

OpenMM

Molecular simulation

Modalities: Molecule · Protein

typed-input-schema · typed-output-schema · version · license · validation-status · compute-profile · context-of-use
data · direct-or-managed

PubChem

Chemical structures, identifiers and bioactivity data

Modalities: Molecule

typed-input-schema · typed-output-schema · version · license · validation-status · compute-profile · context-of-use
data · direct-or-managed

ChEMBL

Bioactivity and drug-discovery evidence

Modalities: Molecule · Target

typed-input-schema · typed-output-schema · version · license · validation-status · compute-profile · context-of-use
data · direct-or-managed

RCSB PDB

Experimentally determined macromolecular structures

Modalities: Protein · Structure

typed-input-schema · typed-output-schema · version · license · validation-status · compute-profile · context-of-use
data · direct-or-managed

Open Targets

Target-disease evidence and tractability

Modalities: Target · Disease · Genetics

typed-input-schema · typed-output-schema · version · license · validation-status · compute-profile · context-of-use
data · direct-or-managed

ClinicalTrials.gov

Clinical-trial registry evidence

Modalities: Clinical trial

typed-input-schema · typed-output-schema · version · license · validation-status · compute-profile · context-of-use
enterprise · bring-compute-to-data

Benchling

ELN/LIMS and registry evidence ingestion

Modalities: Assay · Sequence · Sample

typed-input-schema · typed-output-schema · version · license · validation-status · compute-profile · context-of-use
enterprise · bring-compute-to-data

Snowflake / warehouse

Federated enterprise evidence queries

Modalities: Tabular · Multimodal

typed-input-schema · typed-output-schema · version · license · validation-status · compute-profile · context-of-use
enterprise · bring-compute-to-data

Databricks / lakehouse

Federated scientific data and model execution

Modalities: Tabular · Multimodal

typed-input-schema · typed-output-schema · version · license · validation-status · compute-profile · context-of-use
compute · direct-or-managed

BayesPK

PK/PD, PBPK and population pharmacometrics evidence

Modalities: PK · PD · PBPK · PopPK

typed-input-schema · typed-output-schema · version · license · validation-status · compute-profile · context-of-use
compute · direct-or-managed

BayesPharma Toxicology

Mechanistic and evidence-linked toxicology intelligence

Modalities: Molecule · Safety

typed-input-schema · typed-output-schema · version · license · validation-status · compute-profile · context-of-use
Federated Scientific OS

Bring governed computation to protected data.

Data boundary

Raw enterprise data remains in the customer VPC, warehouse, lakehouse or governed ELN boundary.

Allowlisted execution

The deployable sidecar executes only administrator-registered scientific HTTP adapters and requires an explicit approval ID.

Controlled evidence return

Only explicitly allowed output fields leave the boundary; raw-record/direct-identifier output classes are denied.

Attestation

Released evidence carries SHA-256 provenance and optional HMAC-SHA256 attestation.

Enterprise catalogue entries do not imply live credentials. The sidecar supplies the execution and policy boundary; each customer still configures its own approved adapters, networks and secrets.