Structure Prediction · Model family
AlphaFold 2 / 3
Google DeepMind3
AlphaFold 2 / 3 has 3 matching version records.
ProteinDNARNALigandPrediction
A model is more than a name or category.
Explore what each system consumes, how it represents biology internally, what architecture transforms that representation, what it produces, how releases differ and where the evidence stops. Working releases, development previews, platforms, active companies and acquired identities are explicitly separated.
91version records across 81 model and platform entities
Structure Prediction · Model family
Boltz-1 / Boltz-2
MIT (Barzilay & Jaakkola labs)2
Boltz-1 / Boltz-2 has 2 matching version records.
ProteinDNARNALigandPredictionAffinity prediction
Structure Prediction · Model family
Chai-1 / Chai-2
Chai Discovery2
Chai-1 / Chai-2 has 2 matching version records.
ProteinAntibodyDNARNAPredictionGeneration
Genomics, DNA & RNA · Model family
Evo / Evo 2
Arc Institute + Stanford + NVIDIA2
Evo / Evo 2 has 2 matching version records.
DNAGenerationPredictionRepresentation
Structure Prediction · Model family
OpenFold
OpenFold Consortium / Columbia2
OpenFold has 2 matching version records.
ProteinDNARNALigandPredictionTraining
Protein & Binder Design · Model family
ProteinMPNN / LigandMPNN
Institute for Protein Design, UW2
ProteinMPNN / LigandMPNN has 2 matching version records.
ProteinLigandMetalDNA/RNA contextGenerationInverse folding
Protein & Binder Design · Model family
RFdiffusion
Institute for Protein Design, UW2
RFdiffusion has 2 matching version records.
ProteinMoleculeGenerationDesign
Structure Prediction · Model family
RoseTTAFold / All-Atom
Institute for Protein Design, UW2
RoseTTAFold / All-Atom has 2 matching version records.
ProteinPrediction
Virtual Cells & Single-Cell · Model family
State / Stack
Arc Institute2
State / Stack has 2 matching version records.
CellTranscriptomicsPerturbationRepresentationPredictionSimulation
Antibodies & Biologics · Model family
Absci — Integrated Drug Creation
Absci1
Absci — Integrated Drug Creation has 1 matching version record.
AntibodyProteinGenerationOptimizationPrediction
Virtual Cells & Single-Cell · Model family
AIDO Cell 1.0
GenBio AI1
AIDO Cell 1.0 has 1 matching version record.
CellTranscriptomicsGenomicsRNASimulationPredictionPerturbation response
Spatial & Tissue Systems · Model family
AIDO.Tissue
GenBio AI1
AIDO.Tissue has 1 matching version record.
Spatial transcriptomicsSingle-cell transcriptomicsRepresentationPredictionSpatial context modelling
Genomics, DNA & RNA · Model family
AlphaGenome
Google DeepMind1
AlphaGenome has 1 matching version record.
DNAGenerationPredictionRepresentation
Genomics, DNA & RNA · Model family
AlphaMissense
Google DeepMind1
AlphaMissense has 1 matching version record.
DNAGenerationPredictionRepresentation
Protein & Binder Design · Model family
AlphaProteo
Google DeepMind1
AlphaProteo has 1 matching version record.
ProteinGenerationOptimization
Protein Foundation & Representation · Model family
Ankh
Proteinea / academic collaborators1
Ankh has 1 matching version record.
ProteinRepresentationPrediction
Platforms, Data & Infra · Platform / infrastructure
Basecamp Research (EDEN / BaseFold)
Basecamp Research1
Basecamp Research (EDEN / BaseFold) has 1 matching version record.
MultimodalPlatformTrainingPrediction
Platforms, Data & Infra · Platform / infrastructure
BenevolentAI
BenevolentAI1
BenevolentAI has 1 matching version record.
MultimodalPlatformTrainingPrediction
Antibodies & Biologics · Model family
BigHat Biosciences — Milliner
BigHat Biosciences1
BigHat Biosciences — Milliner has 1 matching version record.
AntibodyProteinGenerationOptimizationPrediction
Genomics, DNA & RNA · Model family
BigRNA
Deep Genomics1
BigRNA has 1 matching version record.
RNATranscriptomicsRepresentationPredictionDesign
Protein & Binder Design · Model family
BoltzGen
MIT / Boltz team1
BoltzGen has 1 matching version record.
ProteinPeptideSmall moleculeGenerationOptimization
Genomics, DNA & RNA · Model family
Borzoi
Calico / academic collaborators1
Borzoi has 1 matching version record.
DNARNAPredictionVariant effect
Genomics, DNA & RNA · Model family
Caduceus
Cornell / Tri Dao collaborators1
Caduceus has 1 matching version record.
DNARepresentationPrediction
Virtual Cells & Single-Cell · Model family
Cell2Sentence (C2S-Scale)
Google Research + Yale1
Cell2Sentence (C2S-Scale) has 1 matching version record.
CellTranscriptomicsSimulationPredictionRepresentation
Small-Molecule & Chemistry · Platform / infrastructure
Chemistry42 / Pharma.AI
Insilico Medicine1
Chemistry42 / Pharma.AI has 1 matching version record.
MoleculeGenerationPredictionDocking
Protein & Binder Design · Model family
Chroma
Generate Biomedicines1
Chroma has 1 matching version record.
ProteinGenerationOptimization
Tissue, Pathology & Imaging · Model family
CONCH
Mahmood Lab1
CONCH has 1 matching version record.
Histopathology imageTextRepresentationRetrievalPrediction
Platforms, Data & Infra · Platform / infrastructure
Cradle Bio
Cradle1
Cradle Bio has 1 matching version record.
MultimodalPlatformTrainingPrediction
Virtual Cells & Single-Cell · Platform / infrastructure
CZI Virtual Cells (rBio, TranscriptFormer)
Chan Zuckerberg Initiative1
CZI Virtual Cells (rBio, TranscriptFormer) has 1 matching version record.
TranscriptomicsProteinMultimodalPlatformTrainingModel ecosystem
Small-Molecule & Chemistry · Model family
DiffDock
MIT (Barzilay & Jaakkola labs)1
DiffDock has 1 matching version record.
MoleculeGenerationPredictionDocking
Genomics, DNA & RNA · Model family
DNABERT-2
Multi-institution research team1
DNABERT-2 has 1 matching version record.
DNARepresentationPrediction
Genomics, DNA & RNA · Model family
Enformer
Google DeepMind1
Enformer has 1 matching version record.
DNAGenerationPredictionRepresentation
Protein Foundation & Representation · Model family
ESM-2
Meta AI (FAIR)1
ESM-2 has 1 matching version record.
ProteinRepresentationPrediction
Protein & Binder Design · Model family
ESM3
EvolutionaryScale (now CZ Biohub)1
ESM3 has 1 matching version record.
ProteinRepresentationGenerationCompletion
Structure Prediction · Model family
ESMFold
Meta AI (FAIR)1
ESMFold has 1 matching version record.
ProteinPrediction
Small-Molecule & Chemistry · Model family
GEMS
Genesis Therapeutics1
GEMS has 1 matching version record.
MoleculeGenerationPredictionDocking
Tissue, Pathology & Imaging · Model family
GenBio-PathFM
GenBio AI1
GenBio-PathFM has 1 matching version record.
Histopathology imageRepresentationPredictionRetrieval
Genomics, DNA & RNA · Model family
Geneformer
Broad Institute1
Geneformer has 1 matching version record.
DNAGenerationPredictionRepresentation
Platforms, Data & Infra · Platform / infrastructure
Ginkgo Bioworks (Datapoints / AI Models)
Ginkgo Bioworks1
Ginkgo Bioworks (Datapoints / AI Models) has 1 matching version record.
MultimodalPlatformTrainingPrediction
Genomics, DNA & RNA · Model family
GROVER
Poetsch Lab / collaborators1
GROVER has 1 matching version record.
DNARepresentationPrediction
Tissue, Pathology & Imaging · Model family
H-Optimus
Bioptimus1
H-Optimus has 1 matching version record.
Histopathology imageRepresentationPrediction
Structure Prediction · Model family
HelixFold3
PaddleHelix / Baidu1
HelixFold3 has 1 matching version record.
ProteinDNARNALigandPrediction
Genomics, DNA & RNA · Model family
HyenaDNA
Stanford (Hazy Research)1
HyenaDNA has 1 matching version record.
DNAGenerationPredictionRepresentation
Antibodies & Biologics · Model family
IgLM / AntiBERTy
Johns Hopkins (Gray Lab)1
IgLM / AntiBERTy has 1 matching version record.
AntibodyProteinGenerationOptimizationPrediction
Antibodies & Biologics · Model family
LabGenius — EVA
LabGenius1
LabGenius — EVA has 1 matching version record.
AntibodyProteinGenerationOptimizationPrediction
Protein & Binder Design · Model family
Latent-X
Latent Labs1
Latent-X has 1 matching version record.
ProteinGenerationOptimization
Genomics, DNA & RNA · Model family
LucaOne
BioMap / collaborators1
LucaOne has 1 matching version record.
DNARNAProteinRepresentationPrediction
Small-Molecule & Chemistry · Model family
MegaMolBART
NVIDIA1
MegaMolBART has 1 matching version record.
MoleculeRepresentationGeneration
Small-Molecule & Chemistry · Model family
MolMIM
NVIDIA1
MolMIM has 1 matching version record.
MoleculeRepresentationGeneration
Antibodies & Biologics · Model family
Nabla Bio — JAM
Nabla Bio1
Nabla Bio — JAM has 1 matching version record.
AntibodyProteinGenerationOptimizationPrediction
Small-Molecule & Chemistry · Model family
NeuralPLexer / Enchant
Iambic Therapeutics1
NeuralPLexer / Enchant has 1 matching version record.
MoleculeGenerationPredictionDocking
Spatial & Tissue Systems · Model family
Nicheformer
Spatial biology research team1
Nicheformer has 1 matching version record.
Spatial transcriptomicsCellRepresentationPrediction
Spatial & Tissue Systems · Model family
Novae
Spatial-omics research community1
Novae has 1 matching version record.
Spatial transcriptomicsRepresentationClusteringPrediction
Genomics, DNA & RNA · Model family
Nucleotide Transformer
InstaDeep (BioNTech)1
Nucleotide Transformer has 1 matching version record.
DNAGenerationPredictionRepresentation
Small-Molecule & Chemistry · Platform / infrastructure
Numerion AI Chemistry Platform
Numerion Labs1
Numerion AI Chemistry Platform has 1 matching version record.
MoleculeGenerationPredictionDocking
Small-Molecule & Chemistry · Platform / infrastructure
NVIDIA BioNeMo
NVIDIA1
NVIDIA BioNeMo has 1 matching version record.
MoleculeProteinDNARNAPlatformTrainingInference
Platforms, Data & Infra · Platform / infrastructure
Owkin
Owkin1
Owkin has 1 matching version record.
MultimodalPlatformTrainingPrediction
Platforms, Data & Infra · Platform / infrastructure
Profluent (ProGen3 / OpenCRISPR)
Profluent Bio1
Profluent (ProGen3 / OpenCRISPR) has 1 matching version record.
MultimodalPlatformTrainingPrediction
Protein & Binder Design · Model family
ProGen / ProGen2 / ProGen3
Salesforce Research → Profluent1
ProGen / ProGen2 / ProGen3 has 1 matching version record.
ProteinGenerationOptimization
Structure Prediction · Model family
Protenix
ByteDance1
Protenix has 1 matching version record.
ProteinPrediction
Protein Foundation & Representation · Model family
ProtT5
Rostlab1
ProtT5 has 1 matching version record.
ProteinRepresentationPrediction
Tissue, Pathology & Imaging · Model family
Prov-GigaPath
Microsoft Research / Providence1
Prov-GigaPath has 1 matching version record.
Histopathology imageRepresentationPrediction
Platforms, Data & Infra · Platform / infrastructure
Recursion (LOWE + Phenomics)
Recursion Pharmaceuticals1
Recursion (LOWE + Phenomics) has 1 matching version record.
MultimodalPlatformTrainingPrediction
Antibodies & Biologics · Model family
RFantibody
Institute for Protein Design, UW1
RFantibody has 1 matching version record.
AntibodyProteinGenerationOptimization
RNA Models & Design · Model family
RiNALMo
University of Zagreb / A*STAR collaborators1
RiNALMo has 1 matching version record.
RNARepresentationPrediction
RNA Models & Design · Model family
RNA-FM
ML4Bio / academic collaborators1
RNA-FM has 1 matching version record.
RNARepresentationPrediction
Protein Foundation & Representation · Model family
SaProt
Westlake / Zhejiang collaborators1
SaProt has 1 matching version record.
ProteinRepresentationPrediction
Virtual Cells & Single-Cell · Model family
scFoundation
Tsinghua / BioMap1
scFoundation has 1 matching version record.
CellTranscriptomicsSimulationPredictionRepresentation
Virtual Cells & Single-Cell · Model family
scGPT
University of Toronto (Bo Wang Lab)1
scGPT has 1 matching version record.
CellTranscriptomicsSimulationPredictionRepresentation
Small-Molecule & Chemistry · Platform / infrastructure
Schrödinger Platform
Schrödinger, Inc.1
Schrödinger Platform has 1 matching version record.
MoleculeProteinSimulationPredictionPlatform
Virtual Cells & Single-Cell · Model family
SCimilarity
Genentech1
SCimilarity has 1 matching version record.
TranscriptomicsCellRepresentationPrediction
Virtual Cells & Single-Cell · Model family
Tahoe-x1
Tahoe Therapeutics1
Tahoe-x1 has 1 matching version record.
Single-cell transcriptomicsPerturbation dataRepresentationPredictionPerturbation response
Tissue, Pathology & Imaging · Model family
TITAN
Mahmood Lab / collaborators1
TITAN has 1 matching version record.
Histopathology imageTextRepresentationRetrievalPrediction
Virtual Cells & Single-Cell · Model family
TranscriptFormer
Chan Zuckerberg Initiative1
TranscriptFormer has 1 matching version record.
TranscriptomicsCellRepresentationGenerationPrediction
Tissue, Pathology & Imaging · Model family
UNI / UNI2
Mahmood Lab / Brigham and Women’s Hospital1
UNI / UNI2 has 1 matching version record.
Histopathology imageRepresentationPrediction
Small-Molecule & Chemistry · Model family
Uni-Mol / Uni-Mol2
DP Technology / DeepModeling1
Uni-Mol / Uni-Mol2 has 1 matching version record.
MoleculeRepresentationGeneration
RNA Models & Design · Model family
UNI-RNA
Academic RNA foundation-model collaborators1
UNI-RNA has 1 matching version record.
RNARepresentationPrediction
Virtual Cells & Single-Cell · Model family
Universal Cell Embeddings (UCE)
Stanford / collaborators1
Universal Cell Embeddings (UCE) has 1 matching version record.
TranscriptomicsCellRepresentationPrediction
AI-Native Discovery Cos. · Platform / infrastructure
Valence Labs (MolGPS / LOWE)
Recursion Pharmaceuticals1
Valence Labs (MolGPS / LOWE) has 1 matching version record.
MultimodalPlatformDiscovery
Tissue, Pathology & Imaging · Model family
Virchow / Virchow2
Paige / Microsoft Research collaborators1
Virchow / Virchow2 has 1 matching version record.
Histopathology imageRepresentationPrediction
Protein Foundation & Representation · Model family
xTrimoPGLM
BioMap / Tsinghua collaborators1
xTrimoPGLM has 1 matching version record.
ProteinRepresentationPredictionGeneration